PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025989-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 90aa    MW: 10280.3 Da    PI: 6.8794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025989-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091260248
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                        ++W++ + + + +a + + ++   +W  +a+ +g g+t++++k r+q +l
  WALNUT_00025989-RA 12 DSWSAKDNKAFERALAVYDKDtpdRWYNVAKAVG-GKTEEEVKRRYQELL 60
                        58********************************.************886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.758964IPR017884SANT domain
SMARTSM007177.9E-91062IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-51366IPR009057Homeodomain-like
PfamPF002492.0E-71360IPR001005SANT/Myb domain
CDDcd001673.46E-52060No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSMSSQS SDSWSAKDNK AFERALAVYD KDTPDRWYNV AKAVGGKTEE EVKRRYQELL  60
EDVQRIESGR VPFPKYKTTG QGNMPDEDKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-35190186RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088924.11e-40DnaJ homolog subfamily C member 2
SwissprotQ58FS36e-36RAD_ANTMA; Transcription factor RADIALIS
TrEMBLW9QGR51e-40W9QGR5_9R
STRINGBra031209.1-P2e-36(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-32RAD-like 1